For the computer lab, you will be given a Jupyter notebook with basic intro to generative AI models along with some exercises on how to use diffusion models to design a protein.
The code repository we will work on is RFdiffusion, a notebook will be made available on the day of the lab.
Here are the references:
- De novo design of protein structure and function with RFdiffusion
- Robust deep learning–based protein sequence design using ProteinMPNN
Colab Notebook Exercises
Please follow the instructions and finish the exercises in this notebook: 
After you have completed the exercises in the notebook:
- During the lab session, tell the lab teacher so he/she can go through what you have done together and maybe ask you a few questions.
- Export the notebook in Google Colab by using
File -> Download -> Download .ipynb, then submit the notebook file to the submission form.
Computer Lab Submission Deadline: Before Friday at 12:00 (noon) CET
NOTE: If you cannot join the lab session, please submit the notebook before the deadline, and find the lab teacher in a next lab session to go through what you have done together.
NOTE: For the seminar on Friday, please read the paper and submit the anwsers to the question sheet before the seminar, see here for more details.